PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0239s0045.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 362aa    MW: 39281.9 Da    PI: 6.516
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0239s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20169219256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+  l+ge
  Kalax.0239s0045.1.p 169 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAFMLRGE 219
                          59******9.**********965...5*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.19E-34168228No hitNo description
SMARTSM003803.3E-39169232IPR001471AP2/ERF domain
PROSITE profilePS5103222.879169226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32169227IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-23169226IPR016177DNA-binding domain
PRINTSPR003673.5E-11170181IPR001471AP2/ERF domain
PfamPF008472.3E-14170219IPR001471AP2/ERF domain
PRINTSPR003673.5E-11192208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAALMDLYSS NRVGSDPFMG GELMEALEPF MRSAPPPPCS SPPSASSSSF ANPIYSSSSS  60
SSIQPSFTHP QLYPNPNVFA PGFDSQLDQH SFFNSSSSSF PASSQFQMFQ SYQSQYDPLV  120
NSFPPPCTSV SAPVSNLARE SQQNYVMSFL SAKPVQMKLS ASPAKPTKLY RGVRQRHWGK  180
WVAEIRLPKN RTRLWLGTFD TAEEAALAYD KAAFMLRGEF ARLNFPNLKH SGSVIRGEFG  240
EFKPLHSSVD AKLQAICDEM SEAQKQGKST GRRKSSKAAA LAVNAPPPPA AEDTTGGDGF  300
VCKAENLSNN SGSDGSAGSS PISELTFPEF DEPAGWNWNP MSENFMLQKH PSEIDWASIL  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20168226160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20168232469ATERF1
3gcc_A2e-20168232469ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296322e-38KP229632.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF09) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008362598.12e-91PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-4-like
TrEMBLD5L1062e-92D5L106_MALDO; AP2 domain class transcription factor
STRINGVIT_18s0001g05250.t014e-87(Vitis vinifera)
STRINGPOPTR_0005s16690.12e-87(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-60related to AP2 4